The phrase "alignments above" is correct and usable in written English.
It can be used when referring to specific alignments or arrangements that have been mentioned earlier in the text.
Example: "Please review the alignments above to ensure they meet the project requirements."
Alternatives: "previous alignments" or "alignments mentioned earlier".
The Octocorallian mutS gene was excluded as it is not present in any other taxa and the two RNAs were also excluded due to high levels of variation in large gaps in alignments above the subclass level, making it difficult for homologous regions to be aligned.
Utilizing the selected CTT zebrafish sequence data identified above, AMOD software[27] was used to display the identities and alignments (above) for manual confirmation and selection of the translation initiation site (TIS).
For the phylogenetic tree construction, only the 3'-end of 18S, 5.8S, and the 5'-end of 28S rDNA were utilized, since the internal transcribed spacers are too divergent to produce reliable alignments above the generic level [15], [21].
For the phylogenetic tree construction, only the exon region of ß-tubulin was utilized, since the intron region is too diverse to produce reliable alignments above the generic level [6].
We carried out maximum likelihood and Bayesian analyses as for the totivirid alignments above.
These individual gene-set trees were inferred from DNA alignments (above).
If the proteomes alignments evoked above were 'classic' protein alignments, then what happened to poorly aligned sites?
The GFF3-format exonerate alignments described above were also loaded into the system.
To determine λ and μ, normalized alignment scores from the random alignments described above were fitted to the cumulative density function, F x)= exp(− exp(−λ(x−μ))).
YAHA now takes each potential alignment from above, and completes the calculation of the full alignment.
The MAFFT-profile alignment option was used for constructing a combined profile alignment from the above mentioned alignments.
