Sentence examples for alignments 1 from inspiring English sources

Because not all sequences could be confidently aligned between birds and mammals, we created three different alignments: 1) all sequences for all bird taxa; 2) all sequences for all mammal taxa; and 3) protein-coding sequences for all birds and mammals.

Contig sequences were edited in SEQUENCHER™ 4.6 (Gene Codes Corporation), aligned using BioEdit© "ClustalW Multiple Alignment" [25], resulting in three alignments: (1) mitochondrial 16S sequences, (2) ITsequencesequences, and (3) combined 16S+ITS1+ITS2 sequences.

Alignment quality-control thresholds were set as follows: E-value cutoff 1e-150, number of alignments 1, output format 0, number of descriptions 1.

Firstly, it was based on a rather uncommon situation, with three different coexisting manual alignments: (1) MeSH to ICD10 alignment through UMLS (same CUI), (2) VCM to MeSH alignment and, (3) VCM to ICD10 alignment.

For alignments 1 (all bird genes) and 2 (all mammal genes), we treated the 12S and 16S rRNA genes as separate data blocks and combined all tRNA sequences into one data block.

Also, all methodologies described below were applied to three different alignments: 1) the 13 protein-coding genes concatenated; 2) protein-coding genes concatenated by respiratory complex; and 3) single genes.

ML and BI analyses of the nucleotide alignments (i.e., alignments 1 3 and 5 6) were built under a GTR+I+G+8 model as suggested by the criteria implemented in ModelTest v0.1.1 [68].

Allelic imbalance of the PCR amplification of HLA-B was negligible, as judged by the ratio of sequencing depth between the two phased alignments; 1 1.68 at the maximum and 1 1.19 on average in heterozygous samples (Table 1).

After estimating rates of non-synonymous (d N ) and synonymous (d S ) substitutions, and rejecting sequences with high d S, 11,124 three-way alignments (1 1 1 orthologs) remained.

These include 30,559 pairwise alignments (14,207 interchromosomal and 16,352 intrachromosomal).

Means (±SEM) are from 18 alignments (437 mutations).