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Our results represent further evidence that the ITS2 data can be aligned for a taxonomically broad set of organisms and that the alignment yields corroborated alliances of chlorophytan taxa.
Such a combined alignment yields an improved tree estimate as all available data is used to resolve the species relationships.
> The introduction of SNP tolerance resulted in only a minor increase in alignment yields.
Alignment yields were 70% for two mismatches and 74% for three mismatches (Table 2).
The multiplicity of an alignment yields information on the repetitiveness of a genomic region.
The addition of splicing involving known splice sites to GSNAP increased alignment yields by 8 9%, and the further addition of novel splice sites increased alignment yields by another 0.3 0.6%.
Similar(49)
The sequence alignment yielded a similarity of 34.3 % with almost 350 residues aligned (including gaps).
Unlike simulated reads, actual reads lack information about their original genomic location, so we determined the performance of programs using alignment yield, which is the percentage of reads that could be aligned by each program with various settings of mismatches, splicing or indels.
2 3 NWs/mm Alignment yield: 80%%.
Strained PDMS stamp can be applied to improve the efficiency of alignment yield and SiNW density.
[19] Electric-field based alignment It involves balance of hydrodynamic and dielectrophoretic forces. 1 NW/12 mm Alignment yield: >98%%.
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