Sentence examples for alignment yielding from inspiring English sources

The alignment pipeline used in PolyPhen-2 selects homologous sequences using a clustering algorithm and then constructs and refines the alignment yielding an alignment containing both orthologs and paralogs that may or may not be full length, which yields a wider breadth of sequences but decreased depth compared with the curated alignments used with Align-GVGD and SIFT [ 36].

The reference-shape-derived conformer alignment yielding the largest AB combo value is used in a final AB shape overlap computation, this time not using a grid-based approach.

After the HMM is trained, it is run for every read-half alignment, yielding the coordinates of the first piece of the read alignment, including the first exon-intron boundary of the splice junction.

To compare the K6001/K6001-B7 genome with the S288c reference, we merged both sequence runs for an alignment, yielding an 38.8 fold total coverage.

Exonic allelic counts, including UTRs, for each polymorphic site were used to calculate allelic expression for this first alignment, yielding standard alignment AEI values.

The 3' UTR was cut from the original alignment, yielding 40 non-identical alleles (each 276-bp in length), 25 of which differed by non-synonymous substitutions.

Alignments yielding an E-value≤0.5 were selected and divided into four classes: Class A: alignments showing complete conservation of the active-site region, Class B: alignments showing partial conservation of the active-site region, Class C: alignments with proteases lacking an active-site annotation, and Class D: all other alignments.

Alignments yielding expectation values ≤ 10-4 and identity values ≥ 60% were accepted as homologous.

Alignments yielding a NJ tree with a total branch length (TBL) exceeding 2 substitutions per site were discarded.

On the other hand, depending on the evolutionary distance of the organisms providing the input pathways, it might be more meaningful do differentiate between the alignments yielding one-to-many mappings as opposed to those providing one-to-few mappings.

Back-trace from the maximum scoring cell runs simultaneous with the following alignment operation, yielding a CIGAR string, which indicates soft clipping and indel positions.