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Sequences of 51 full-length P2X receptors were aligned using ClustalW (EBI) to obtain an optimal alignment within the boundaries of the zfP2X4.1 sequence contained within the crystal structure.
In the SFF model, location of a repeat block uniquely specifies alignment within the block, because all symbols from sequence X must come first (aligned to gaps), followed by symbols from sequence Y.
Root alignment within the bone 5.
Crown alignment within the dento-alveolar envelope 3.
VSMCs infiltration and alignment within the scaffold was then evaluated in vitro and in vivo.
Sorensen (2002) proves that organizational culture enhanced coordination and control within the firm and improved organizational alignment within the firm.
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The co-linear blocks of the 3 genomes were determined using BLASTn, and the alignment within each of the blocks was based on the Mauve method [63], with a seed length set to 11.
BFAST is a powerful and complete means to perform billions of short sequence alignments within the context of large genomes in a highly sensitive and tunable manner.
Infocon [24] identified a total of 161 blocks of high information content (BHICs) with highly conserved multi-species alignments within the 200 kb region.
The D/E/N/Q mis-alignment within the RIP family of proteins is representative of a more general limitation of structure alignment programs.
To prevent mistakenly merged exons, Tiling Assembly searches for junction alignments within the identified exons.
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