Sentence examples for alignment with the maximum from inspiring English sources

We use saturated arithmetic to ensure that extending an alignment with the maximum score retains that score.

For each instance, the alignment with the maximum EC in five runs was chosen as its final result.

Rather than sum over many multiple alignments, for each gene segment I use the alignment with the maximum score as detailed below.

A local algorithm allows finding the optimal alignment of two fragments of the studied sequences, whereby the regions before and after the fragments forming the alignment with the maximum weight are not taken into account when the weight is calculated.

Phylogenetic trees were built from the protein alignment with the maximum-likelihood method using the PHYML program [ 75].

This is because PALO selects isoforms that are as similar as possible in length and this should result in less indels, and Cons selects alignments with the maximum number of amino acid identities divided by alignment length (including indels).

Only alignment pairs with the maximum value of the number of bases spanned in the read by the two alignments (s 2 – r 1 + 1) that is observed over all alignment pairs for a given read are eligible to construct junction candidates.

The decrease is ascribed to the rotation of domains into alignment perpendicular with the maximum stress direction, conversion of a part of the reversible susceptibility into irreversible susceptibility, and an increase in the demagnetization energy via the creation of lamellar domains as well as the disappearance of closure domains.

Bowtie was implemented in the –v alignment mode with the maximum number of mismatches set to 3. Paired end reads were aligned to the transcriptome with both read pairs needing a valid alignment within a given locus to be counted as a match.

From the deduced amino acid sequences identified, phylogenies have been computed using the Phylogeny.fr platform [ 63], which uses MUSCLE for multiple alignment with Gblocks for alignment curation and the maximum likelihood PhyML method for tree building using the MEGA software 4.0 [ 64].

We thus inferred phylogenetic trees from the poa alignment under the maximum likelihood criterion with RAxML version 7.04 [54].