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The alignment with the highest base identity was found when a single mRNA was aligned in multiple places.
Another feature of this voice, according to Coffin (2006, 153), is the use of resources of Engagement to negotiate reader-writer alignment with the high-stakes, morally-charged evaluations being advanced (see Miller et al. 2014, 2016 for recent discussions of Engagement in written student essays).
Ok, here it is from my Heart to yours... "I am in Alignment with the Highest Version of myself".
Only the alignment with the highest score for each read was kept for further analysis.
Only the alignment with the highest similarity was counted if one assembled 454 sequence matched more than one Sanger sequences.
For each pair of proteins, only the alignment with the highest BLASTP E-value, as well as the highest overall sequence coverage, was chosen as representative of the gene pair.
Note that growth in the (00 1) mirror texture cannot explain the observed 12 reflections, as upon molecular alignment with the high-symmetry directions the reflections of both textures coincide (Supporting Information).
The alignment with the highest probability is deemed optimal.
When two alignments had the same coverage, we selected the alignment with the higher score.
Finally an alignment with the highest score is reported for each read.
To optimize this gain function, we need to find the alignment with the highest overall probability in the model.
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Since I tried Ludwig back in 2017, I have been constantly using it in both editing and translation. Ever since, I suggest it to my translators at ProSciEditing.

Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com