Sentence examples for alignment with sequences from inspiring English sources
Bacterial and fungal TEFAP followed by alignment with sequences from curated databases revealed 7 bacterial and 17 ascomycete taxa in A. canescens, and 5 bacterial taxa in A. torreyi.
In order to further characterize the 66 HRVs identified in the 64 samples, the nucleotide sequences located in the 5'UTR (285 nt) and the VP4/VP2 genes (420 nt) were chosen to allow comparative alignment with sequences of reference serotypes and field strains available in GenBank.
The rRNA genes were identified by alignment with sequences of other arthropods.
Predicted boundaries of small and large ribosomal subunit RNA genes were verified in alignment with sequences from both Naegleria and jakobid mtDNAs.
Based on codon usage and comparative alignment with sequences from other Plasmodium species, these heptads are best explained by a recent tandem duplication of a single heptad motif in P. falciparum or its immediate ancestor [ 31].
The construct was analyzed by nucleotide sequencing and alignment with sequences of H. pylori strain 60190 (s1/ m1 allelic type) vacA sequence (GenBank accession number U05676), and strain 95-54 (s1/ m2 allelic type) (GenBank accession number U95971).
We have demonstrated the suitability of short-read sequencing for de novo assembly and annotation of genes without prior genome information, as well as its reliability and complementarity by alignment with sequence from a close, but distinct, species.
It also implements a normalized similarity matrix that is said to perform better for alignments with sequences of different lengths.
To facilitate their embedding in the same genotype space, we focused only on alignments with sequences no shorter than 100 amino acids.
There are 13,430 sequences (45% of the combined dataset) with at least one PFAM domain annotation compared to 20,326 sequences (67%) that are annotated with orthologs predicted from pairwise BLAST [22] alignments with sequences from the NCBI NR database.
The recognition of regions of disorder is thus crucial to avoid spurious sequence alignments with sequences of unrelated, structured proteins.
