The phrase "alignment with sequence" is correct and usable in written English.
It can be used in contexts where you are discussing the arrangement or correspondence of elements in a specific order or pattern.
Example: "The alignment with sequence is crucial for ensuring that the data is processed accurately."
Alternatives: "conformity to sequence" or "correspondence with sequence".
Bacterial and fungal TEFAP followed by alignment with sequences from curated databases revealed 7 bacterial and 17 ascomycete taxa in A. canescens, and 5 bacterial taxa in A. torreyi.
Predicted boundaries of small and large ribosomal subunit RNA genes were verified in alignment with sequences from both Naegleria and jakobid mtDNAs.
The construct was analyzed by nucleotide sequencing and alignment with sequences of H. pylori strain 60190 (s1/ m1 allelic type) vacA sequence (GenBank accession number U05676), and strain 95-54 (s1/ m2 allelic type) (GenBank accession number U95971).
An alignment with sequences of C. obtusus, A. caerulea and C. nemoralis showed a conserved sequence, TACCTTCCAAG (8797-8809) withis this non-annotated region of C. obtusus, which represents the anticodon loop and part of the anticodon stem of tRNA-G.
Figure 2 shows the sequence from one of the ticks shown in an alignment with sequences from B. burgdorferi strain B31 and a representative B. garinii sample from GenBank.
Based on codon usage and comparative alignment with sequences from other Plasmodium species, these heptads are best explained by a recent tandem duplication of a single heptad motif in P. falciparum or its immediate ancestor [ 31].
Alignments with sequence identity equal or higher than 98% that cover at least 70% exon length were used as the criteria to identify the match of an EST with a particular exon.
We used all pairwise alignments with sequence divergence greater than 5% (since estimation is less accurate at low divergence rates) to estimate selection intensities either simultaneously or independently (Table 2).
In this experiment, we used only alignments with sequence identity in the reference alignment below 30%.
