Sentence examples for alignment with representatives from inspiring English sources

To perform sequencing of the entire gene, a ClustalW alignment with representatives from group II was performed to identify primers (DNASTAR, Madison, WI, USA).

Phylogenetic analysis based on a multiple alignment with representatives of the Chapaev transposases available in Repbase (fig. 1) places the silkworm transposon within the Chapaev3 subgroup (Kapitonov and Jurka 2007).

Alignments with representative archaeal sequences obtained at GenBank databases were carried out using ClustalX [46].

Based on sequence alignments with representative GenBank sequences Has-ubfm encodes an open reading frame (ORF) that shares significant similarity with ubiquitin-like fold modifying proteins from various organisms (Fig. 3A).

An alignment with a representative from each protein family is shown in Figure 2A.

An alignment with 18 representative TLP sequences from the major sub-clades shows the diversity of eukaryote TLPs.

If a functional residue from another domain in the superfamily maps to a gap in the structural alignment with the representative domain, that residue is ignored in the rest of the analysis.

Finally we aligned the most canonical sequences of each putative SM family from G. intestinalis and C. merolae (as predicted by BLAST) to an SM alignment with one representative of each supergroup for each paralogue family.

a, Extended sequence alignment of aeRF1 superfamily with representatives from all families and clades (compared to the limited subset shown in Fig. 2a).

Multiple sequence alignment of MHV-A59 nsp4 with representatives from all three groups of the genus Coronavirus reveals that the membrane topology of nsp4 from all group members is similar.

Using MUSCLE [68], [69], each GOS ss-rRNA sequence was aligned with the representative alignments (using the representatives as a profile).