The phrase "alignment with multiple" is correct and usable in written English.
It can be used when discussing the compatibility or agreement with several factors, entities, or criteria.
Example: "The project's success depends on its alignment with multiple stakeholders' expectations."
Alternatives: "conformity with several" or "agreement with various".
Allowing for two mismatches, a 36 bp read maps with only 94% identity, inevitably leading to alignment with multiple locations, especially in the case of closely related multi-gene families.
To try to identify the region of STIL most likely to be involved in an interaction with CPAP, we carried out a sequence alignment with multiple metazoan STIL proteins.
Nine genes producing alignments with multiple unigenes are shown.
In some instances, a single queried sequence returned alignments with multiple targets.
The mature MWs for PpSP28 (gi∣15963511) and PpSP30 (gi∣15963513) are 27.2 and 27.8 kDa, respectively, and both proteins share 82.1% primary sequence identity by pairwise alignments, with multiple homologous domains.
Beyond the BLASTX-based functionality, PREPACT users may provide sequence alignments with multiple queries including multiple self-chosen references for predicting editing in individual loci using the same "commons" functionality.
All alignments with multiple RGC_CAs were manually checked, and several obvious cases of misidentification of orthology (e.g. complete loss of all catalytic residues characteristic of a given family of enzymes) were removed.
We applied tests for signatures of positive selection using the models of codon substitution implemented in PAML (Yang 2007) to a subset of 124 genes (i.e., excluding conserved paralogs and alignments with multiple copies of one gene in one species).
The XSAnno pipeline incorporates previous whole genome alignment and local alignment methods with multiple filters to eliminate false positives caused by differences in mappability.
All plant genes were aligned with multiple sequence alignment using the CLUSTAW program http://align.genome.jp/.jp/
Care should be taken however to avoid spurious conclusions arising from multiple comparisons when repeatedly applying a coevolution algorithm to the same alignment recoded with multiple alphabets.
