Sentence examples for alignment were created from inspiring English sources

In order to test if the removal of fast evolving sites from the sequences could improve phylogenetic inference [6], two shorter versions of the original alignment were created and also subjected to ML inference (Table S3).

500 resamples of the alignment were created with Seqboot version 3.67 [ 50].

Unrooted tree files for each alignment were created using a standard mammalian species tree [ 87] ((human, chimpanzee), (mouse, rat), dog).

Three types of alignment were created: A: duplicate sequences from the array were combined with all other gene family members.

The human-mouse alignment was created by aligning both genomes using blastz [ 104].

Multiple alignment was created by aligning all sequences against Hidden Markov Model GTP_EFTU from Pfam [ 105] using program HMMALIGN [ 18].

A multiple sequence alignment based on the structure alignment was created through a companion program, Match → Align.

A final alignment was created in which the POMGnT1 sequence was aligned with the sequence of the homology model.

The sequences were aligned with publicly available Emu sequences for each region and a concatenated alignment was created for the control and COI regions.

For each DNA sequence, a multiple alignment was created by Clustal W Thompsonn et al. 1994).

The alignment was created using ClustalW2 (http://www.ebi.ac.uk/Tools/msa/clustalw2/). The zinc-finger domain is indicated by gray shadowing.