Sentence examples for alignment were built from inspiring English sources

Indices for the alignment were built using the Illumina iGenomes gene annotation for mm9 as a splice junction database and the sjdbOverhang parameter set to 100.

The alignment was built by using ClustalX 1.81 and GeneDoc 3.2 tools.

An alignment was built using 17 beta tubulin sequences retrieved from the study of Jurjevic et al. (2012).

A multiple sequence alignment is built up gradually using a series of pairwise alignments, following the branching order in a phylogenetic tree.

A random multiple sequence alignment was built from 283 random sequences of 236 amino acids and was used as a control for the MDS analysis of human GPCRs.

A multiple alignment is built for each cluster using the representative and up to 30 of its nearest sequences with ClustalW [39].

First, a progressive alignment is built based on a UPGMA guide-tree.

Using these sequences, a multiple sequence alignment was built using MAFFT version 7.130 [ 41].

The multiple sequence alignment was built based on the progressive alignment method (36) using the BLOSUM62 matrix (37).

A concatenated alignment was built using the 31 genes used by Cicarelli et al., (2006; see table S2).

For each family, a multiple alignment was built with Muscle [ 27], and the phylogenetic tree deduced was reconstructed using PhyML [ 28].