The phrase "alignment weights" is correct and usable in written English.
It is typically used in contexts related to machine learning, neural networks, or optimization, referring to the parameters that adjust the model's predictions.
Example: "The model's performance improved significantly after fine-tuning the alignment weights during training."
Alternatives: "adjustment parameters" or "tuning coefficients".
The software package PRRN/PRRP uses a hill-climbing algorithm to optimize its MSA alignment score and iteratively corrects both alignment weights and locally divergent or "gappy" regions of the growing MSA.
That is, during ontology alignment, weights are determined by ontologies, rather than by individual concepts.
The alignment weights can be adjusted relative to the alignment weights of peptides which are highly specific to their parental KO-family (Frequency weight of peptide-X = 1/ Total number of significant alignments of peptide-X).
Parameters allow modification of the alignment weights, minimum alignment score to report, and maximum pattern size detected.
See Figure 9 for a comparison of the number of operations required by the two algorithms for different alignment weights.
Here, we describe a web-based implementation of the method called SeSAW (sequence-derived structural alignment weights) that can automatically perform putative functional residue mapping.
In other words, it is impossible to restore the reference alignment if its weight does not (almost) differ from the alignment weight of random sequences.
Considering this Zhang [ 12] developed a new tool, miRU, which replaced BLAST with Smith-Waterman local alignment, weighting more for seed regions and allowed bulges.
Among them, blood cells consistently show high significance, without even a single instance from 10,000 samples having either the alignment weight or the edge overlap of the random sample exceeding the original alignment.
Analogous to conventional sequence alignment without weights, the similarity between two aligned sequences can only be measured with sequence identity.
We measured the foot length, arch height, weight-bearing leg heel alignment, non-weight-bearing leg heel alignment, forefoot angle relative to the rearfoot, forefoot angle relative to the horizontal axis, and foot pressure.
