Sentence examples for alignment weight from inspiring English sources

In other words, it is impossible to restore the reference alignment if its weight does not (almost) differ from the alignment weight of random sequences.

Among them, blood cells consistently show high significance, without even a single instance from 10,000 samples having either the alignment weight or the edge overlap of the random sample exceeding the original alignment.

The software package PRRN/PRRP uses a hill-climbing algorithm to optimize its MSA alignment score and iteratively corrects both alignment weights and locally divergent or "gappy" regions of the growing MSA.

Parameters allow modification of the alignment weights, minimum alignment score to report, and maximum pattern size detected.

That is, during ontology alignment, weights are determined by ontologies, rather than by individual concepts.

The alignment weights can be adjusted relative to the alignment weights of peptides which are highly specific to their parental KO-family (Frequency weight of peptide-X = 1/ Total number of significant alignments of peptide-X).

See Figure 9 for a comparison of the number of operations required by the two algorithms for different alignment weights.

Here, we describe a web-based implementation of the method called SeSAW (sequence-derived structural alignment weights) that can automatically perform putative functional residue mapping.

Considering this Zhang [ 12] developed a new tool, miRU, which replaced BLAST with Smith-Waterman local alignment, weighting more for seed regions and allowed bulges.

The Web site takes as input the user's alignment weights, the algorithm version (standard or packed), whether it will be used for short sequences (single word) or long sequences (multiple word) and where the final score should be found.

We used the following parameter values within TRF for genome analysis: alignment weights +2, −7, −7 (representing match, mismatch and indel penalties); matching probability of 0.80 and an indel probability of 0.10 (pM = 0.80 and pI = 0.10, respectively); a minimum alignment score of 20 and a maximum period size of 10.