Sentence examples for alignment we obtain from inspiring English sources

From the alignment, we obtain the point f in W ̂ that is matched with the segment boundary ℓ2 in Z. f = ϕ w ( k ) ; where ϕ z ( k ) = ℓ 2 (6).

When we perform further hand-curation of hypervariable regions of the 16S V3 in the merged alignment

Finally, we note that the alignment we obtain is of the form many to many, not one to one.

For each alignment, we obtained a dataset that was as complete as possible after deleting highly polymorphic indel regions.

After sequencing and manual alignment, we obtained the full-length sequences of bbtCaspase-8, bbtCaspase-1/2, and bbtCaspase3-like.

Following the M. musculus EST analysis, length filtering, and subsequent MUSCLE alignment, we obtained sequence alignments of 395 genes to test for evidence of positive selection.

Based on the Rfam seed alignment, we obtained a multiple alignment of the 100 samples annotated with a consensus structure derived from the Rfam consensus structure of the entire family.

When we tried global alignment, we obtained quite similar tendencies (data not shown), which is reasonable, given that the coverages of the local alignments were mostly over 95% (data not shown).

We took the binding sites for the 10 genes (all except HOP1), and after their multiple alignment, we obtained their consensus: taTTTtGGAGTaata[4,179]ttGGCGGCTAA (the lower case letters are less conserved, whereas uppercase letters are the most conserved).

We took the binding sites for the 10 genes, and after their multiple alignment, we obtained the composite motif NNDTBNGDWGDNNDH[5,179]WBRGCSGCYVW, where we represent each column in the alignment with the IUPAC symbol corresponding to the bases that appear at that position.

Using these alignments, we obtained twelve features for each nsSNV.