Sentence examples for alignment was viewed from inspiring English sources
The protein alignment was viewed using GeneDoc [ 86].
To achieve this, the aligned columns within an existing alignment are viewed as a single entity and the score between two columns is essentially the sum of all pairwise scores.
Sequence alignment were viewed and edited for publication with Jalview alignment editor [ 88].
ClustalX [ 36] was used for aligning both nucleotide and amino acid sequences and PHYLIP trees generated from alignments were viewed using TreeViewX [ 37].
Alignments were viewed and analyzed on Geneious v5.5 (http://www.geneious.com).
These alignments were viewed using OpGen's MapViewer software.
The highest scoring alignments were viewed using the 'region in detail' view of the Ensembl genome browser.
The computed alignments were viewed using the graphical viewer program LALNVIEW (http://pbil.univ-lyon1.fr/software/lalnview.html) [Duret et al., 1996].
Usually such consistent alignments is viewed as evidence that proteins belonged to LUCA – which existed before divergence form the universal common ancestor.
A multiple alignment was made for each family and the alignments were viewed in Jalview [ 41], and the amphioxus sequences were cut with the reference transcripts as a model to gain only the 7TM regions.
Alignments were viewed with the BLink tool from NCBI [ 57], and upstream regions were viewed with Artemis through the Frankia alni ACN14a Genoscope website, and the Integrated Microbial Genomes (IMG) website [ 29, 58].
