Sentence examples for alignment was used from inspiring English sources

The domains were aligned individually, and the combined alignment was used as input for MEGA2.

The RDP alignment was used as a profile to align GenBank sequences using ClustalW v1.83 [ 30].

The "Align manually" option, which allows the user to individually set the time alignment, was used.

Finally, this alignment was used to construct a phylogenetic tree using the same previously mentioned software.

18 placental mammals from the Multiz 28-way multiple alignment was used as input.

The full alignment was used in the case of the ERF-B3, CDF and ID families.

The resulting amino acid alignment was used as a guide to obtain the corresponding nucleotide alignment.

This alignment was used as a reference to which the alternative alignments are compared.

Where appropriate, a longer alignment was used for the phylogenetic analysis (see supplementary data).

The target-template alignment was used to build the model in Swiss Model [80], [81].

Given the problematic nature of repeated sequences, the best initial alignment was used as a starting point only.