Sentence examples for alignment was set from inspiring English sources

The variants calling parameter from the short reads alignment was set as "samtools mpileup –C50 –E –u" to generate a BCF file.

In addition, the identity percentage cutoff for a significant alignment was set to be 100 for the last cycle and 95 for all other cycles of Megablast [ 32].

Alignment parameters were as follows: the maximum alignment score acceptable for a best alignment was set at 45; the gap extend penalty was set at 10; and the number of good quality bases for an acceptable read was set at 50.

The degree of environmental adaptation is hardly quantified, so a qualitative rating of the existing alignment is set forth.

If the remaining part of the read is too short (eight nucleotides or fewer by default), the alignment is set aside.

In contrast, knees within an acceptable range of mechanical limb alignment were set as negative findings.

The MAC threshold is set to 0.5 and the P-value threshold for suboptimal alignment is set to 0.1.

To determine the specificity and sensitivity for each range of anatomic limb alignment, varus or valgus malalignment using mechanical limb alignment were set as positive findings.

All scores where and do not form a Watson Crick or wobble base pair, and therefore should not start an alignment, are set to zero.

The alignment is set to retain maximum equivalence in TM, and important motifs such as DRY and NPXXY (in TM3 and TM6, respectively) were kept aligned in both query and template.

The critical values of the alignment were set as follows: E-value ≤ 1e-10, identity percentage (indicates the similarity between the aligned sequences with respect to the length of the matched region) ≥ 60, and coverage percentage (indicates the similarity between the aligned sequences with respect to the size of the query's sequence) ≥ 80.