Exact(2)
Finally, ProtTest [ 44] determined that the best fit to the amino-acid alignment was provided by the JTT + Γ4 + I + F model [ 45].
Support values for each node of the phylogenetic tree from the gapless secondary alignment was provided by the approximate likelihood-ratio test for branches [ 32] and the test, based on multiple comparisons of log-likelihoods elaborated by Shimodaira and Hasegava [ 33].
Similar(58)
The complete alignment is provided in Additional file 1: Figure S1.
The alignment is provided as Additional file 3 and the data set can be downloaded from http://www.gjpvanwesten.nl/proteindescriptors.nl/proteindescriptors
The alignment is provided as supporting info.
The statistics of changes made by this alignment are provided in Table 2.
Our SSU rRNA alignment is provided in the Supplementary Material.
The alignment is provided in the supplementary materials [see Additional file 2].
Timings which include the time required for alignment are provided in Supplementary Figure S12.
(The style guide for the manual word alignment is provided in Appendix3).
The sequence alignment is provided in additional file 2. Maximum likelihood (ML) and Bayesian phylogenetic analyses were initially performed (fig. 3).
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