Sentence examples for alignment was performed with from inspiring English sources

Alignment was performed with the Bowtie v0.12.7 aligner [ 33] setting the –v argument to the desired maximum number of allowed mismatches.

The multiple sequence alignment was performed with the PRALINE web server (Simossis and Heringa [2005]).

The multiple sequence alignment was performed with ClustalW in Bioedit (Hall 1999).

Sequence alignment was performed with the Clustal W program with the genes in the Nipponbare genome as a reference.

Sequence alignment was performed with ClustalX and homology modeling was carried out using MODELLER 9v8 program [95].

In order to avoid cross-mapping of small RNA reads, a rough alignment was performed with Bowtie software.

The alignment was performed with NCBI's BLASTN variant of the BLASTALL program [11] without any low-complexity filters and an expectation value of 10.0.

Alignment was performed with ClustalX [84] and improved by eye with Se-Al v2.0a11 (Rambaut, A. 1996. Se-Al: Sequence Alignment Editor. Available at http://evolve.zoo.ox.ac.uk/).ac.uk/

The alignment was performed with the program ICM [17] and used for homology modelling of the native ACVR1 sequence using the same software.

Alignment was performed with Efficient Large-Scale Alignment of Nucleotide Databases (ELAND) which matches a large number of reads against the human genome with no more than two errors in the first 32 bases.

Alignment was performed with default parameters.