The phrase "alignment was made between" is correct and usable in written English.
It can be used when discussing the establishment of agreement or coordination between two or more parties, concepts, or elements.
Example: "An alignment was made between the marketing and sales teams to ensure a unified approach to customer engagement."
Alternatives: "alignment was established between" or "alignment was achieved between".
Alignments were made between the GWSS and GSS genomes using BLASTN (with filtering turned off, −F F), and the GSS sequence was adjusted if the region of alignment was high quality, the homopolymer length was greater than 4 nts and differed by only one nt.
Pairwise alignments were made between the plasmids and the tRNA sequences to identify the att sites.
Eliminating pathogenic and cancerous libraries 41 libraries were kept and alignments were made between the coding sequences of the gene groups with the EST dataset using BLASTN program with a sequence matching criterion of 60% identity and 80% overlaps.
Alignments were made between optical maps and the in silico maps of the sequence scaffolds based on the restriction enzyme recognition sequence and the lengths of the restriction fragments using map aligner software developed at the Broad Institute.
To assess sequencing error rates for regions closer to the ends of the assembled transcripts, additional alignments were made between blue crab cDNA sequences from the NCBI sequence database (GenBank) and sequences from our assembled transcriptome.
Alignments were made between viral proteomes and viral transcriptomes to determine their degree of overlap (Table 3 and additional file 1, Table S8); alignments include any known, unannotated, or novel viral genes with a distinct match between one transcript and one protein.
In each test case, assessment of the overall test alignment was made by using the sequences in common between the Pfam and HOMSTRAD entry.
Comparison was made between alignment of implants that were revised for failure and nonrevised implants: no statistically significant differences were found (Table 3).
The templates are ranked based on the difference score between the raw alignment score and the reverse alignment raw score in which the alignment is made with the reversed query sequence [36].
