The phrase "alignment was identified" is correct and usable in written English.
It can be used in contexts where a specific alignment or agreement has been recognized or established, often in discussions related to strategies, goals, or data analysis.
Example: "After reviewing the project objectives, it was clear that alignment was identified between the team's goals and the company's vision."
Alternatives: "alignment was recognized" or "alignment was established."
While the best alignment scores were generally reached before the tenth step in each SATé run, the overall best scored alignment was identified only after many more iterations on a 8-core cluster (Table S2).
Patients were exluded from Brouwer's analysis if valgus alignment was identified on clinical examination, which may partly explain the difference in results.
The best-fit model for each alignment was identified by ProtTest v1.4 [ 63] using the AIC model selection criterion and a BIONJ tree.
On the other hand, after 1984, codon 137 of the alignment was identified as positively selected considering all the data after 1984 and in 9 out of 10 random data sets analysed.
Poorly aligned and gap-rich regions of the alignment were identified by eye and excluded from the analyses.
Ambiguously aligned hypervariable loop regions within the 870 taxa alignment were identified by eye and coded as binary absence (gap) and present (any base) data [ 64] before fed into RAxML version 7.2.2 [ 65].
[25] reported that open wedge osteotomy should be the first stage of treatment in patients with chronic isolated PLC injuries if genu varus alignment is identified.
Ambiguous regions in the resulting alignment were identified and removed using GBlocks 0.91b [92].
Interestingly, the structural alignment is identified for each cutoff value, and our approach appears to be robust regarding this parameter (data not shown).
The structural alignment is identified correctly using the ANOLEA/All, the ANOLEA/ROI or the ANOLEA/SSE predictors (Fig. 8A, 8B and 8C, respectively).
Exons too short to be identified by read alignment are identified by Tophat junction alignments.
