Sentence examples for alignment was excluded from inspiring English sources

For alignments in Group B, if no ortholog could be located in A. gam, the alignment was excluded.

One patient with medial compartment OA and clinical varus alignment was excluded because of valgus alignment assessed on the whole-leg radiograph, resulting in a total sample of 91 patients.

Both ends (20 aligned sites) of each alignment were excluded due to the ambiguity of the alignments.

The 22 tRNA genes were also aligned manually, and ambiguous and gap alignment were excluded from the phylogenetic analyses.

The 16S rRNA and cox1 sequences were aligned with default settings of the program Clustal X v1.83 [ 86]; ambiguously aligned sites in the 16S rRNA alignment were excluded.

The multiple sequence alignment of each protein was converted into a codon alignment, the poorly aligned and divergent regions in each codon alignment were excluded using Gblocks 0.91b [ 63] with the -t = c, −b3 = 5, −b4 = 5 and -b5 = half options, and the individual gene alignments were concatenated using Phyutility 2.2.6 [ 59].

To obtain the data set with all three codon positions, the multiple sequence alignment of each protein was converted into a codon alignment, the poorly aligned and divergent regions in each codon alignment were excluded using Gblocks 0.91b [ 97] with the -t = c, −b3 = 5, −b4 = 5 and -b5 = half options, and the individual codon alignments were concatenated using Phyutility 2.2.6 [ 92].

Phylogenetic analyses were performed using near full-length aligned SSU rDNA sequences, only the extreme 5'-and 3'-ends of the alignment were excluded leaving 1472 sites, using PHYLIP 3.6b [45].

The two other sub-processes of this self-organised collective movement – collision avoidance and alignment – are excluded or held constant respectively in this study.

Ambiguous regions in the alignment were excluded from phylogenetic analyses.

In addition, sequences with more than 10 leading and/or 10 terminal gaps and lower quality sequences with more than 10 ambiguous nucleotide bases in each alignment were excluded from later analysis.