Sentence examples for alignment was edited with from inspiring English sources

The alignment was edited with GeneDoc program.

The alignment was edited with Bioedit [ 25].

The resulting alignment was edited with Jalview [ 30] and subjected to extensive manual curation removing columns having many gap characters.

The sixty best BLAST hits were aligned using MAFFT [ 59] and the alignments were edited with Gblocks [ 60] to remove poorly aligned regions from alignments.

The sequences were aligned with ClustalX 2.0.11 software; the alignments were edited with BioEdit sequence alignment editor v7.0.9.0 (Tom Hall, Ibis BioSciences, Carlsbad) and the chromatogram viewer FinchTV v1.4 (Geospiza Inc., Washington).

Alignments were edited with GeneDoc (http://www.psc.edu/biomed/genedoc).

Alignments were edited with the JalView [59] editor which allows the user to visualize alignment conservation via various residue coloring schemes as well as conservation and consensus plots.

Sequence alignments were edited with ALINE (Bond and Schuttelkopf, 2009).

Multiple alignments were edited with the SEAVIEW program [ 52] and used in the phylogenetic analyses.

Alignments were edited with the program ED of the MUST package [ 74] and redundant and partial sequences were removed at this step.

The alignment was edited manually with eBioX and was then used to reconstruct the maximum likelihood phylogenetic tree using RAxML-HPC [ 36] under the WAG + Γ model (using the PROTGAMMAWAGF option) with 25 categories of substitution rate variation.