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The sequences were aligned by using the phylogeny tree program [ 15], and the alignment was corrected manually.
Alignment was corrected manually when necessary.
The meta-diaphyseal alignment was corrected, and two Schanz pins were inserted at the diaphysis.
The alignment was corrected manually using BioEdit sequence alignment editor (Hall, 1999).
The alignment was corrected manually using BioEdit v7.0.5 [ 103].
The alignment was corrected by hand using SEAVIEW software, and the sequence divergence (dinter) was computed with ClustalW (fig. 1).
Similar(50)
And all too often, classes can be packed, with students having no chance of their poor alignment being corrected.
The first step performs a pre-detection of signatures alignment, and in the second step the alignment is corrected and the signatures are detected by a matcher.
But this is not always the case; sometimes a high identity alignment is corrected by a distant matrix (dash-dot line) and vice versa (rounded-dash line).
Other annotation features were predicted as follows: transmembrane domains by TMHMM 2.0c [ 52]; signal peptides by SignalP 3.0b [ 53]; COG similarities and Pfam domain composition by rpsblast [ 24] The 16S rDNA sequences of S. amnii and 31 related organisms from Fusobacteriaceae family were aligned using the ClustalW program [ 54] and the alignments were corrected by visual inspection.
For genetic distances, the genome alignments were corrected for multiple changes according to the GTR+I+G model (more generalized distance corrections with distributions of rates across sites or proportions of invariant sites were also tried and produced similar values).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com