Sentence examples for alignment was conducted from inspiring English sources

A multiple genome alignment was conducted by aligning contigs from the different assemblies to the PacBio reference assembly to identify conserved regions and to evaluate gaps in the different DSM 10061 assemblies.

After manual inspection and editing where necessary, sequences were aligned using ClustalX [33]; the intron alignment was conducted by taking into account secondary structure following Goddard and Burt [6].

Sequence alignment was conducted with BLAST tools provided by the National Center for Biotechnology Information.

Alignment was conducted using MUSCLE implemented in MEGA5.2 (Tamura et al. 2011) and verified in Mesquite v3.03 (Maddison and Maddison 2015).

Sequence alignment was conducted using ClustalW, and a maximum-likelihood tree with 100 bootstrap replicates was constructed using MEGA version 4.0 (Tamura et al., 2007).

Alignment was conducted using ClustalW within MEGA6 (Tamura et al. 2013), gap opening penalty 5; gap extension penalty 1.5 was set for both pairwise and multiple alignments.

Phylogenetic analyses of the amino acid alignment were conducted with MrBayes and PhyML 2.4.5 [ 37].

Additional rounds of alignment were conducted with successively lower levels of sequence similarity.

Sequence quality assessment and alignment were conducted with CLC Genomics Workbench (version 5.0; CLC bio, Cambridge, MA, USA).

Quality ascertainment and sequence alignment were conducted in SEQMAN™ version 6.1.

Phylogenetic analyses of the alignment were conducted using Protpar on the Phylip package [ 33] through the PIE Phylogeny Interface Environmentt) suit at.