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For ESTs that aligned with more than one genomic scaffold or scaffolds that aligned with two or more ESTs on different LGs, the most precise alignment was chosen based on alignment length and DNA sequence identity.
Since manual alignment was chosen at step 3 of the analysis dialog box, the DATK next opens a time alignment window, displayed in Figure 4. Here, the user's task is to move the response signal (denoted with a dashed purple line) in time using a slider, so that it coincides with the excitation signal (denoted with a solid blue line).
When preliminary urban routes were laid out in 1955, a split alignment was chosen to serve both cities equally.
For multimappers, only one alignment was chosen randomly by the M 1 parameter setting.
When the alignment was chosen TrimAl [ 83], GBLOCKS [ 60] and Guidance [ 84] were used to edit it.
The optimal partitioning scheme for each alignment was chosen from among several commonly used partitioning strategies using the corrected Akaike information criterion (AICc) [ 164, 165].
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Global alignment is chosen because we wish to attempt to align the entire 25mer from each sequence.
The liquid crystal alignment is chosen so that its relaxed phase is a twisted one (see Twisted nematic field effect).
In the final step, a final alignment is chosen based on the the coverage of the alignment over the target sequence.
If confidence scores are identical then an alignment is chosen arbitrarily.
To find out the candidate sequences described above, highly conserved regions identified in the reference alignment were chosen as follows.
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