The phrase "alignment was based on" is correct and usable in written English.
It can be used when discussing the criteria or factors that determined how something was aligned or organized.
Example: "The alignment was based on the team's collective goals and individual strengths."
Alternatives: "alignment was determined by" or "alignment was founded on".
For each partition aligned in BALI-PHY, 500 iterations were performed, and the final alignment was based on all alignments recovered excluding the burn-in.
Alignment was based on the identification of the mid-cycle 17β-estradiol drop (aligned cycle Day 0), which provides a reasonable estimate of the day of ovulation.
The algorithm involved (Genetic Sequence Alignment) was based on FM-index.
Optical alignment was based on an optimized signal from 10 nm fluorescent beads (Immunocheck, Epics Division).
The three genes used were not length variable and the unambiguous alignment was based on conservation of amino acid reading frame.
A pair-wise distance matrix was generated employing Olsen correction and masking nucleotides not present in the E. coli sequence (since the RDP alignment was based on an E. coli sequence).
Instead of summing up substitution scores for aligned residues and subtracting gap penalties, the score of an alignment is based on P-values of local sequence similarities.
Since alignment is based on morphological features detected by a computer program developed for this study, samples can be removed from the microscope allowing us to repeatedly measure multiple thick samples at the same time.
Quantifying these limits is crucial for operations such as robotic stop & go surveying, where coarse alignment is based on Simultaneous Location and Mapping (SLAM) and fine alignment is achieved through ICP.
As I wrote in my earlier article, "Why The Five Levels Of Alignment Key Is Motivation," causal alignment is based on a shared view of what matters and why.
