Sentence examples for alignment was assigned from inspiring English sources

Each alignment was assigned a size value, which denoted the minimum size of the participating domains.

The frequency of between-isoform differences within a family was calculated as follows; first, each position in the alignment was assigned 0 or 1 (for the same or different amino acids in the two compared isoforms, respectively) for each species and then the values were averaged within a family.

In order to analyze and score the degree of similarity between the P. falciparum and E. coli neighborhood subnetworks a shortest-path graph kernel was used to measure the similarity between two labeled networks, and a numerical score for each alignment was assigned [ 78].

Segments of the alignment were assigned to structural motifs based on the KcsA structure.

However, it is impossible to know for certain if all positions in an alignment are assigned correctly even when using state-of-the-art methods.

Gap characters in the alignment are assigned a weighted average of mismatch and match scores: SG = pNS0 + (1 - pN S1.

Each base in the alignment is assigned the value +1 if the base matches the reference or −5 otherwise (mismatches and gaps).

In step 2, we define a partitioning scheme in which all sites in the alignment are assigned to a single subset, and we then select a best-fit model of molecular evolution for this subset.

Formally, global alignment is assigned a real-valued score S: (1) S (f ) = ∑ u ∈ V 1 n (u, f (u ) ) + ∑ (u, v ) ∈ E 1 e (u, f (u ), v, f (v ) ), where n : V 1 × V 2 → R + is the score of mapping a node of V1 to a node in V2, and e : E 1 × E 2 → R + is the score of mapping an edge of E1 to an edge of E2.

Alignments were assigned to genomic coordinates as follows.

To compare the distributions of rates (see below) both the real and simulated alignments were assigned an evolutionary rate category according to 0.025 substitutions/position intervals.