Sentence examples for alignment viewing from inspiring English sources

Other options in the HTML output include viewing alignment, viewing Position Specific Probability Matrix (PSPM), and finding replications that are similar to the best motif found [ 5].

SAMtools also offers many additional features such as alignment viewing and conversion to a BAM file.

To view the alignment in color format and for further adjustment, third-party alignment viewing software may be used, such as SeqView (http://pbil.univ-lyon1.fr/software/seaview.html) and BioEdit (http://www.mbio.ncsu.edu/BioEdit/bioedit.html).html

CDD curators make extensive use of protein 3D structure, when available, as in-house curation tools are tightly coupled to the Entrez 3D structure database Molecular Modeling Database (MMDB) (10) and structure neighboring data computed with Vector Alignment Search Tool (VAST) (11), and the associated 3D viewer Cn3D (12) is the main alignment viewing and editing tool.

Since we are unaware of a viewer that is also an aligner our provided visualization is likely the most convenient way to produce alignment views generated by our method.

Patients with a history of surgical treatments or arthritic changes in the entire ankle joint, deformity proximal to the ankle as seen on plain radiographs, or varus deformity of the hind foot as seen in the heel alignment view were excluded.

Hypertext markup language (HTML) output is also available and incorporates a query-template sequence alignment view as well as DFIRE and GB22 scores.

Alignment view of genome-wide differences in Enterococcus faecalis strains.

Alignment view of genome-wide differences in Clostridium paraputrificum strains.

Alignment View adopts Google map like technology so that all alignments can be viewed, dragged and moved smoothly.

Finally, each individual CCS read alignment was visualized using the Text Alignment View (tview) in SAMtools.