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Open image in new window Fig. 3 Normal alignment versus rotary subluxation of the scaphoid.
Results of significance testing for topology comparisons of the full alignment versus the three other largest data partitions.
Multithreading implementation is straightforward because profile alignment versus a database is in itself an embarrassingly parallel task.
This comparison, however, does not index the power of function-based alignment versus anatomic-curvature based anatomic-curvature basedcalignment using the same initialization point.
The output of the PSI-BLAST program divides the various hits into two categories, i.e. sequences producing significant alignment versus those where the E values are worse than the threshold (default value set at.005).
The magnitude of allelic ratio correction by IUPAC alignment versus the standard alignment was similar to that observed in the smaller dataset above (i.e. a 3-fold uncorrected allelic ratio corresponds to a 1.96-fold IUPAC-corrected ratio; Figure 3).
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This evaluation was also used to evaluate FT alignments versus spectral comparison in [42].
We calculated the coverage of the individual sample alignments versus the Y.
A discussion of 'forward' scores, which sum over all possible alignments, versus methods such as Smith-Waterman (and also BLAST), which consider only the highest scoring alignment, would not have been out of place during the early years of GIW.
Using model series of amino acid sequence pairs, we studied the relative "quality" of results produced by local and global alignments versus (1) the relative length of similar parts of the sequences (their "cores") and their nonhomologous parts, and (2) relative positions of the core regions in the compared sequences.
The sheep masked sequence was aligned versus itself and the alignment is showed as percentage identity plot (pip).
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Justyna Jupowicz-Kozak
CEO of Professional Science Editing for Scientists @ prosciediting.com