Sentence examples for alignment utilizing from inspiring English sources
Recently, neural network-based image alignment utilizing global features has been a relatively new research subject.
Knowledge of rRNA structure is increasingly important to assist phylogenetic analysis through reconstructing optimal alignment, utilizing molecule features as an additional source of data and refining appropriate models of evolution of the molecule.
Sequences from YJM1078, YJM1273, YJM1388, YJM1401, and YJM1439 were added to the multiple alignment utilizing MAFTT [ 78].
The alignment utilized a ferry across the Monongahela River.
Furthermore, pairwise alignments utilize more sequence information than multiple sequence alignments do, especially when closely related (for instance, a few percent differences) and less-than-perfect sequences are aligned.
%GC content and sequencing depth of each base, were determined from the alignment file utilizing a custom perl scripts.
Huang et al. [ 9] designed a new ontology alignment algorithm utilizing artificial neural network approach to learn and adjust the weights that associated with different semantic aspects.
Thus, we tested if we could detect changes in isoform expression in mouse liver by taking our read alignments and utilizing the Cufflinks/Cuffdiff package [ 26] with the ENSEMBL annotation database.
To decrease the number of spurious alignments in the dataset of A5Es and A3Es, we used the original ESTs and created new transcript-to-genomic alignments, by utilizing two different algorithms: 1) BLAT [ 76], as stored in the UCSC database (see Availability and requirements section for URL); and 2) EXALIN [ 75], with the parameter set (m, n, q, r, x) = (25, 25, -25, -25, and -25).
Only near perfect alignments were utilized in the alignment assembly process, requiring at least 95% identity across at least 90% of the transcript length.
Then, profile-to-profile alignments were utilized, in which the alignment within each order is held fixed but nucleotide positions are allowed to shift among orders.
