The phrase "alignment using the" is correct and usable in written English.
It can be used in contexts where you are discussing the process or method of aligning something, typically in technical or academic writing.
Example: "The alignment using the new software has significantly improved our workflow efficiency."
Alternatives: "alignment through the" or "alignment via the".
All plant genes were aligned with multiple sequence alignment using the CLUSTAW program http://align.genome.jp/.jp/
Sequences were aligned in MEGA version 5.2.2 [ 72] to produce a codon based alignment using the MUSCLE algorithm.
shRNAs were identified by sequence alignment using the Blat algorithm35.
We rotate the new ticklabels, and adjust their alignment - using the set_xaxis call - so that they fit below the plot.
We estimated maximum likelihood (ML) trees from each multiple alignment using the protein substitution model LG+F+Γ implemented in RAxML HPC-MPI 7.2.8 with 100 bootstrap replicates59.
PartitionFinder v1.1.183 was used to determine the partition scheme and substitution model for the mitogenome alignment using the Bayesian Information Criterion and the greedy algorithm.
The United States opened in a 4-3-3 alignmentheusize the size of Abby Wambach, who is 6 feet, and Cindy Parlow, who is 5-11, to muscle Sweden's implacable defense up front.
Sequence alignment using the BLAST similarity search in the GenBank database revealed that the amino acid sequence was similar to ALS derived from Anabaena sp. PCC 7120.
To compare the accuracy of toric intraocular lens (IOL) alignment using the Verion Image-Guided System versus a conventional manual ink-marking procedure.
Furthermore, we applied 3D alignment using the maximum common subgraph.
Radiographic analysis consisted of assessment of alignment using the methods described by Paley and Tetsworth [7] and the Insall Salvati ratio [8].
