Sentence examples for alignment trace from inspiring English sources
The thresholds of miRanda for candidate target sites were paring score S ≥ 150 and energy score ΔG ≤ −18 kcal/mol, where S is the sum of single-residue-pair match scores over the alignment trace and ΔG is the free energy of duplex formation from a completely dissociated state which was calculated using the Vienna package [ 64].
When users click on the track options, a multiple-alignment trace view is launched that displays all traces that are of interest as well as the related control groups, enabling a more comprehensive comparison of data from different studies.
These results are also useful for cavity design, alignment, ray tracing and beam position control in 3D optical systems.
Adjacent stacks had 10% overlap to guarantee the precision of later alignment and tracing.
By predicting binding affinities directly in the Pse genome, without relying on sequence alignment and tracing the fate of individual sites, we showed that even the overall affinities are largely un-conserved.
Manual image alignment, lesion tracing and lesion volume calculations were completed using ANALYZE 6.0 software.
The search for HS1.2 polymorphisms was refined using the specialized alignment tool Trace-Archive BLAST http://blast.ncbi.nlm.nih.gov/Blast.cgi BLAST_SPEC=TraceArchive&BLAST_PROGRAMS=megaBlast&PAGE_TYPE=BlastSearch.nih.gov/Blast.cgi BLAST_SPEC=TraceArchive&BLAST_PROGRAMS=megaBlast&PAGE_TYPE=BlastSearch
A brain mapping study needs several enabling techniques, including 3D image registration (alignment), neurite tracing, neuronal pattern classification, visualization and mining methods (Peng, 2008).
The amino acid sequence alignments were traced back to their corresponding nucleotide sequences and the nonhomologous segments were trimmed with an ad hoc perl script.
The alignment of NCBI trace archive sequences to AluY (Figure 1A) was performed using ClustalW [12] and visualized using Jalview [13].
A 443-nucleotide region was identified that contained 32% (45/141) of all polymorphic sites within the 184 sequence trace alignment.
