Sentence examples for alignment tools to from inspiring English sources

LoQ uM can work with a wide range of alignment tools to run the aligner for the user, compile the mappings returned by the aligner, calibrate the quality of these mappings and return the list of mappings with more reliable mapping quality scores.

For all benchmarks, we use four structure alignment tools to generate reference alignments: TM-align (Zhang and Skolnick, 2005), Matt (Menke et al., 2008), Dali (Holm and Sander, 1993) and our in-house structure alignment tool DeepAlign.

Over the next few months, we plan to scan these fragments and use our automatic mesh alignment tools to search for new matches among the fragments.

BFAST was compared under various models of errors and insertion/deletions to other alignment tools to determine if there were observable improvements in alignment in the simulated datasets (Figure 3).

If activated, ReXSpecies 2.0 can employ several sequence alignment tools to redo the alignment, per default muscle [ 61] is used.

Then, we performed 3-Opt PISwap on these initial mappings obtained by the two alignment tools to evaluate the performance of our algorithm.

We employed the Short Oligonucleotide Analysis Package (SOAP) alignment tool to align the HiSeq reads from each sample to a cohort of 2637 nonredundant species of NCBI complete genomes, including bacteria, archaea, fungi, and viruses.

We selected only COSII loci that were identified in two or more of our species, and aligned those sequences in MEGA5 using the MUSCLE alignment tool to assess the proportion of variable sites (Edgar, 2004; Tamura et al., 2011).

Although CLUSTALW is still the most popular alignment tool to date, recent methods offer significantly better alignment quality and, in some cases, reduced computational cost.

A correction is introduced in the alignment tool to prevent counting overlapping residues twice.

Finally, 31/260 predictions corresponded to ones identified by the 'galign' alignment tool to contain one mutant and zero wild-type reads, and could correspond to true lesions.