Sentence examples for alignment tool is from inspiring English sources

The most widely used approach is a sequence-based search, in which a local sequence alignment tool is used to find target sites with near-perfect WC complementarity to the query miRNA [10] [14].

A two steps heuristic splice alignment tool is generated in this investigation.

The second component, the sequence alignment tool, is another critical step that determines the computational cost of analysis.

Although many of the basic algorithms used by YAHA are not novel, their inclusion in a DNA alignment tool is.

YAHA's main strength as a general alignment tool is that it simply attempts to identify all possible matches according to the parameters set by the user.

An acknowledged difficulty for a spliced alignment tool is to properly localize an alignment in presence of nearby same-strand duplications.

The SOAP version 2.20 alignment tool was used to align ChIP-Seq reads to the mouse genome build mm9 (Li et al., 2009).

In addition, SPEM (Zhou and Zhou, 2005), a global profile profile alignment tool, was used to align the query with the top 10 templates found by a sensitive machine learning fold recognition method (Cheng and Baldi, 2006).

Moreover, in this shorter time, the multiple alignment tool was often able to find a better scoring alignement.

The LAST alignment tool was used to calculate the potential lncRNA-mRNA and lncRNA-pre-mRNA interactions.

The LAST alignment tool was used since it allows a custom score matrix to be utilized103; this is important because of the presence of so-called 'wobble pairs' in addition to canonical compounds.