The phrase "alignment tool and" is correct and usable in written English.
It can be used when referring to a specific tool designed for alignment purposes, often in technical or mechanical contexts.
Example: "The technician used the alignment tool and ensured that all components were properly aligned before proceeding with the installation."
Alternatives: "alignment device and" or "alignment instrument and".
Each 36 bp read was first shortened to 32 bp (a requirement for the alignment tool) and aligned to the grape reference genome [24] using Illumina's ELAND alignment tool.
In these cases, the genes were aligned using the MAFFT alignment tool and default parameters [ 113, 114].
Sequences were aligned using the translation alignment tool and the MAFFT plug-in in Geneious (Biomatters Ltd. Auckland, New Zealand) [ 32] and edited manually.
Reference and novel nucleotide, and corresponding amino acid sequences were aligned using the Geneious 4.7 sequence alignment tool and editor [ 53].
An implementation of the algorithm has been integrated with the previously reported SOCS alignment tool, and was used to align CpG methylation-enriched Arabidopsis thaliana bisulfite sequence data, exhibiting a 2-fold increase in sensitivity compared to existing methods for aligning SOLiD bisulfite data.
Sequences for each locus were aligned in Geneious V6 (BioMatters) using the embedded alignment tool, and manually inspected, and corrected.
PowerPoint has new shape tools, new alignment tools, and an enhanced Presenter view that lets you zoom in and out to highlight key points.
Any program that has sequence alignment tools and uses sequences in FASTA format will be sufficient.
Different protein alignment tools, and different configurations of those tools, provide varying results for the same query and subject protein sets.
Our findings demonstrate the widely varying abilities of common read alignment tools and their impact on downstream variant calling.
We have experimented with many different alignment tools and consistently found the same problems in our eQTL mapping.
