Sentence examples for alignment to the reference from inspiring English sources

Because Sanger SNPs were identified by alignment to the reference sequence, regions that could not be aligned were inaccessible to SNP discovery and thus not comparable with array genotypes.

Each aligned sequence read is considered one hit at the 5′ end of its alignment to the reference assembly.

Finally, any remaining A at the end of the read was removed prior alignment to the reference genome and counting.

The sequences that aligned to the reference genome as described above were sorted by the start position of their alignment to the reference genome.

All datasets exhibited a good read quality (Phred score > 20) and a high fraction of read alignment to the reference genome (alignment score ≥ 93%) using HISAT.

First, reads were required to have a best alignment to the reference assembly with at least 3% more identical nucleotides than the second-best alignment.

To assess sequences that were too divergent for alignment to the reference, we assembled de novo unmapped read pairs along with pairs where only one of the two reads had been mapped.

Furthermore, this value additionally accumulates an error gained in the process of alignment to the reference model, which we are unable to extract from the final result.

Then these short reads were alignment to the reference genome sequence (Nipponbare), and 2928 SNPs and 423 INDELs which are specific for the bulked F2 were identified.

This methodology consists of: comparing a shape fingerprint; locating common reference shapes; and then reuse of the alignment to the common reference, where the shape overlap and the feature overlap are computed at that recycled alignment to the reference shape.

Contigs were ordered and oriented based on their alignment to the reference genome C. difficile 630 using NUCMER.