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Cells grown on the patterns with 80 350 nm grooves showed the most alignment to the pattern and alignment decreased as the depth and pitch of the grooves decreased.
Neurite alignment ratios (TL/AL) approaching unity indicate substantial alignment to the pattern direction along the entire the length of the neurite; higher ratios are indicative of greater wandering or random growth.
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The C-terminal region of bacteria, which interacts directly with FtsA, lacks a classical consensus sequence due to substitutions but a sequence logo has been derived from an alignment to display the pattern of protein sequences at the C-terminal [ 4], and there is some relative conservation of amino acids at particular positions.
Many snake assemblies showed patterns of alignment to the optical map that were predominantly in the level 2 coverage category.
The obtained total protein pattern was used for later alignment to the specific immunodetected signals.
A classic routine for 3D image pattern registration is to first align patterns globally, followed by a local alignment to transform one pattern to the other (Rueckert et al., 1999; Toga, 1999).
Strong alignment to multidirectional patterns, that is, repeating 90° angle steps, would be evidenced by high percentages around 45° alignment angles since the pattern was rotated 45° during imaging.
By searching for clusters of fragments exhibiting this pattern of alignments to the reference assembly, it is possible to identify putative inversion events.
We used the PipMaker alignment tool to analyse the patterns of sequence conservation across the mouse Jmjd6 and the neighbouring loci 1110005A03Rik and Sfrs2.
For a pair of image patterns, the purpose of the global alignment is to standardize the patterns as a whole so that they possess similar scales, positions and directions.
We therefore used mouse rat human triple alignments to infer substitution patterns in the mouse lineage.
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