Sentence examples for alignment to select from inspiring English sources

Subsequently, ProtTest version 3.2 was run with AIC calculation on the alignment to select the best-fit substitution model [ 97].

Secondary structure prediction for hTERT TEN domain and alignment to selected eukaryotic TERT TEN domains.

Alignment to selected well-studied cholesterol oxidases and phylogenetic analysis indicated a higher similarity of CgChoA to the non-covalent FAD-dependent enzymes belonging to the Class I family.

In principle, this could be done by comparing the query to the known and to the ad-hoc families, and then using the resulting alignments to select potential homologs.

Lastly, SOMA uses this set of good alignments to select a layout of non-overlapping alignments to the consensus map, in effect constructing a genome-wide scaffold of contigs.

Thus, the rescore score replaces the original prediction method (alignment) score to select the best model.

This yields a ranked list of alignments with associated scores (prediction method scores or alignment scores), which are used to rank the alignments and to select the best one.

However, we presented alignments of all RAMP families (for these alignments, we tried to select the most diverse representatives for each family) discussed in this work in Additional File 1  to back all our claims.

We omitted some ESTs in which the edge position of the sim4 alignment to the selected ORF was unclear.

For each query sequence, its suite of pairwise alignments was evaluated to select a well-supported description line and to build a weighted index of descriptive words.

Unlike other aligners that report all, or one, alignment per query, or that use simple heuristics to select alignments, YAHA uses a directed acyclic graph to find the optimal set of alignments that cover a query using a biologically relevant breakpoint penalty.