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Airborne distributed Position and Orientation System (POS) depends on transfer alignment to obtain high accuracy motion parameters of sub-systems by using accurate motion information of main system, including position, velocity and attitude.
We applied SiPhy to the control alignment to obtain a null distribution of LO scores for calculating P-values.
Families of repeat sequences were obtained computationally from BESs and then subjected to multiple sequence alignment to obtain 122 consensus sequences.
Finally, we used assembly AGP information and BLAST alignment to obtain coordinates for each snip-SNP on the cb3 sequence assembly.
We took the projection of human, chimpanzee, mouse, rat, dog, and chicken from this 8-way alignment to obtain our Marker set.
We remove segmental duplications based on criteria such as the score or the length of the alignment to obtain an unambiguous map.
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Multiple alignments for each family were obtained by first computing the pairwise global alignment with the reference sequence using the gap program [ 55], and second by stacking all pairwise alignments to obtain a multiple alignment.
Multiple alignments for each family were obtained by first computing the pairwise global alignment with the reference sequence using the gap program [ 51], and then stacking all pairwise alignments to obtain a master-slave multiple alignment.
They search the neighborhood regions of the initial alignments to obtain locally optimal solutions, which improve the information content of the discovered profiles.
In our PR analysis, a PR curve is constructed for each method on each alignment, and all the PR curves for a method are averaged across all alignments to obtain its overall curve.
For example, in Table 4, when k is 7 and "match-core" is 2 times k, a candidate alignment is required to have at least 14 contiguous matching symbols; and then, this candidate is scored using the local alignment algorithm to obtain the final alignment.
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