The phrase "alignment to match" is correct and usable in written English.
It can be used in contexts where you are discussing the process of adjusting or coordinating elements to ensure they correspond or fit together properly.
Example: "We need to ensure the alignment to match the specifications outlined in the project plan."
Alternatives: "adjustment to fit" or "coordination to align".
We trimmed the alignment to match the aligned length of the Rhagoletis sequences and constructed phylogenetic trees (neighbour-joining, 1000 bootstrap intervals).
This requirement forces the best alignment to match a majority of the probe sequence, since BLAT produces many spurious short alignments with 100%percentt identity.
The mapping has been done in the following manner: for the channel, we have used a sequence alignment to match the corresponding residue in Shaker or Kv1.3 onto paddle chimera.
Since the library preparation process generates directional constructs (strand-specific library preparation), we expected legitimate alignments to match only one of the two orientations of each reference transcript.
CDS sequences were aligned to match the protein alignments codon-by-codon.
Connectivity-based strategies could emerge as an alternative to deformation-based alignment leading to match the connectomes of the subjects rather than images.
Secondly, the search algorithm to determine the initial overlap between two structures is sped up by choosing an efficient sequence alignment technique to match these strings.
This builds on work by Mavoa et al. [ 11], who developed a sequence alignment method to match GPS and diary data.
Furthermore, since the final objective of PPI network alignment is to match functional orthologs, we assess for each method how many matched pairs are present in the HomoloGene database, a set of curated functional orthologous pairs based on the comparison of the protein as well as the DNA sequence which we consider here as a 'gold standard' for disambiguation purpose.
Based on the alignment due to matching interactions and on the annotation of one of the alignment partners, we predict the function of several ORFs.
An alignment is said to match a query to a coding region if the subject portion of the alignment overlaps the coding region and is on the same strand.
