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The position of the synchronization codes is used in frame alignment to indicate the start of packaged binary data.
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However, a review of the literature or alignment to orthologues indicates that these may be tolerated changes.
Alignments were used to indicate the transcript regions and identify splice junctions, which were subsequently used as hints to derive gene structure models with Augustus [ 37, 38].
In the alignment task, subjects had to indicate whether the central element was offset to the left or right from vertically separated reference elements (vertical alignment) or above and below horizontally separated reference elements (horizontal alignment).
The list of recommendations from each of the reference guidelines was assigned a point score according to the number of recommendations that should be present to indicate alignment with the reference guideline.
To indicate alignment accuracy evaluation for short-read datasets with varying error rate existing, the results are shown in Figure 5(a) for sensitivity and Figure 5(b) for precision comparison.
In cases of single pair matches, a merge was performed if the alignment to a sequence contig indicated an overlap.
Time zero indicates alignment to the start of stimulus presentation.
Raw genomic data (including unassigned genomic regions, whole genome shotgun sequencing and trace archives) were also searched when there was no suitable BLAST match to a candidate or when the alignment to the genome assembly indicated a missing genomic region.
Neurite alignment ratios (TL/AL) approaching unity indicate substantial alignment to the pattern direction along the entire the length of the neurite; higher ratios are indicative of greater wandering or random growth.
The second letter, 'm/u/N', indicates the alignment to the reference genome sequence, 'm' represents multiple alignments, 'u' represents unique alignment and 'N' represents no alignment results.
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