Sentence examples for alignment to include from inspiring English sources
As the local algorithm of BLAST does not extend the alignment to include terminal mismatches (e.g., U C), proteins ending with an Sec can escape identification by the standard search methods.
Merging is performed by expanding the co-ordinates of the original alignment to include the nearby alignment; analysis of matches, mismatches and indels is then performed on the combined alignment.
This clarification of the model for euAP3 evolution has been facilitated by the greatly improved sampling of basal eudicot lineages, which, in turn, allowed the refinement of the AP3 alignment to include fewer indels than that used by Vandenbussche et al. [ 22].
The 97% identity threshold was set to allow contig alignments to include different allelic forms and polymorphisms caused by EST sequencing errors.
Quality-filtered sequences were aligned using the Silva 16S reference alignment, screened to include only overlapping regions of sequence, pre-clustered (diffs=2), and chimera checked (uchime).
Therefore, the search for the best alignment option has to include the neighboring syllables.
Because cAMP-dependent Protein kinase (PKA) often serves as a prototype of the entire PKs [37], the final alignment was truncated to include only positions present in the catalytic subunit of PKA (PKAc), and for all calculations, the numbering of PKAc was used.
Further support for these two transcript populations is given in Figure 10A where a segment of the wheat sequence alignment is shown to include two EST populations.
Because some sequences were limited in length, the final worldwide ON1 alignment was trimmed to include only the C-terminal G gene region over the terminal 333 nt.
Even though the PAML4 individual ancestor is the shortest, it is Mega5 that has left out the very most highly conserved region of the alignment when asked to include 100% of the MSA.
Single-exon alignments were required to include at least 50 bp, while in multi-exon alignments, each aligned exon was required to be longer than 10 bp, with introns between 5 bp to 5000 bp.
