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Hoechsmann et al. utilized tree alignment and forest alignment to implement local similarity comparison in RNA secondary structures [ 11].
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This alignment is easy to implement using the Levenshtein algorithm [22].
The multiple sequence alignment was used to implement classical phylogenetic inference programs, using either maximum parsimony or distance methods.
This alignment algorithm is straightforward, easy to implement, and has low computational complexity compared to complicated global alignment algorithms.
The framework can be extended to implement new alignment and classification algorithms.
This is the reason why several of them are deciding to implement optical alignment systems to monitor the displacement of tracking elements in operation.
Progressive alignment methods are efficient enough to implement on a large scale for many (100s to 1000s) sequences.
The authors used a custom Haskell embedding of algebraic DP to implement the alignment algorithm for rapid prototyping, easy evaluation of the scoring function and optimizations.
A complete set of files needed to implement this alignment pipeline is provided at https://github.com/justin-lack/Drosophila-Genome-Nexus.git, along with a step-by-step list of commands, which is also provided here as Supporting Information, File S1.
Our results show the usefulness of II-VI semiconductors to implement type-II band alignment in photovoltaic-based systems.
Thus, range alignment is implemented to the range-compressed SA data firstly by some novel approaches [9 11], which are proven to be effective even for SA data.
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