The phrase "alignment to identify" is correct and usable in written English.
It can be used in contexts where you are discussing the process of aligning elements or ideas in order to identify something specific, such as goals or issues.
Example: "We need to ensure proper alignment to identify the key challenges facing our project."
Alternatives: "coordination to determine" or "congruence to recognize".
Next, the reads at each CAL are further aligned using gapped local alignment to identify the best match.
These sequences were aligned using Clustal Multiple Alignment to identify conserved and variable regions suitable for primers and probes that could differentiate the species.
We then used MuMMer 2.3[ 31]to align the contig sets for each strain, using an all-against-all alignment to identify contigs that were similarly constructed between the assemblers.
As an example, we have analyzed the tetratricopeptide repeat (TPR) motif, using multiple sequence alignment to identify the significance of each position in the TPR.
Here we develop a new WD40 Repeat Recognition method (WDRR), which uses predicted secondary structure information to generate candidate repeat segments, and further employs a profile profile alignment to identify the correct WD40 repeats from candidate segments.
The BPPS procedure was applied on this alignment to identify sequence patterns that most distinguish ErbB3 and ErbB4 from other ErbB members (ErbB1 and ErbB4).
The human reference PAX2 mRNA (GenBank: NM_003987) was used as query in cross-species Spidey alignment to identifying corresponding cattle sequences.
Trimmed unmapped reads are aligned and used in conjunction with previous alignments to identify chimeric events by examining exon junctions from the annotation file.
MarkUs uses geometric alignments to identify structural neighbors of a query protein, which can then be filtered based on biological criteria, such as common GO annotation, conserved residue patterns, and putative functional sites.
We manually inspected multiple sequence alignments to identify common sites of the 18S rDNA : large insertions occurring in some sequences were excluded from the alignment to get consistent divergence estimate across pairwise comparions.
