Sentence examples for alignment to detect the from inspiring English sources
Another possibility is that all 3 of these features are conserved, but what is called lack of conservation is simply a failure of EPO alignment to detect the conserved TFBS arrangement and composition.
We searched for frame-shifts and stop codons in the concatenated CYTB and COX1 alignment to detect the presence of Numts in our data, but found no indication of such insertions.
We used protein-level sequence alignment to detect ΨEs throughout the paper; this is so that we can exploit the signal of protein coding sequence that is still in these sequences to detect them in the genomic DNA.
Briefly, the program slides a statistically optimum window size along the sequence alignment to detect selective constraints and estimates the probability of replacements per non-synonymous sites (d N ) and substitutions per synonymous sites (d S ).
We employed two separate tests for primer-primer interaction, one based on a standard local alignment to detect stretches of complementary sequence, the other based on the worst-case ΔG of the 3'-tail of one primer interacting somewhere along the strand of another primer.
Another one is de novo sequence alignment to detect large changes in the genome, for example, in cancer patients.
Finally, we applied a masking procedure to the optimized alignment to detect and remove amino acid columns/positions containing either no or a low phylogenetic signal.
Consensus contigs developed across all 27 genotypes served as the basis for alignment to detect SNP.
The STAMP method utilizes a global or un-gapped local alignment to detect DNA motifs similarities to defined PWMs.
It also analyzes soft-clipped reads from alignment to detect insertions accurately since existing tools underestimate insertion SVs.
