Sentence examples for alignment to detect from inspiring English sources

Consensus contigs developed across all 27 genotypes served as the basis for alignment to detect SNP.

Another one is de novo sequence alignment to detect large changes in the genome, for example, in cancer patients.

It also analyzes soft-clipped reads from alignment to detect insertions accurately since existing tools underestimate insertion SVs.

The STAMP method utilizes a global or un-gapped local alignment to detect DNA motifs similarities to defined PWMs.

Finally, we applied a masking procedure to the optimized alignment to detect and remove amino acid columns/positions containing either no or a low phylogenetic signal.

Another possibility is that all 3 of these features are conserved, but what is called lack of conservation is simply a failure of EPO alignment to detect the conserved TFBS arrangement and composition.

To test this possibility, we scanned genome alignments to detect such events (see Materials and Methods).

The authors need to carefully inspect the alignments to detect obscure sequences.

Tiling Assembly relies on these partial read alignments to detect short exons (Supplementary Fig. S1).

Finally, the last path identifies chimeric fusion transcripts through ChimeraScan [ 22], a tool based on Bowtie [ 23] alignments to detect putative fusion breakpoints.

As such, skepticism towards the initial results of an analysis pipeline designed to use these alignments to detect SVs is warranted and a post-candidate-list-analysis step appears to be the de-facto norm.