Sentence examples for alignment to construct from inspiring English sources

We used this core genome alignment to construct a maximum likelihood phylogeny of the 89  K.

We performed a multiple alignment of the retrieved class 4 HDACs of 82 different species and used this alignment to construct phylogenetic trees.

To find more ancient relatives of UlaG among MBL RNases, we used a structure-guided sequence alignment to construct a profile Hidden Markov (HMM) model [ 33] to probe the complete non-redundant protein sequence database.

We constructed a multiple alignment of conserved domains from 89 identified Snail related proteins (Additional file 2) and used this alignment to construct phylogenetic trees using different phylogenetic methods (see Methods).

The output-ends of the 32 source-fibers and the input-ends of the 32 detection-fibers are paired with a side-by-side alignment to construct 32 bifurcated-fiber optodes.

Since different multiple alignment software packages can yield very different alignments, use of the profile HMM approach is more robust than relying on a single multiple alignment to construct a consensus or a position-specific score matrix.

The methodology used here, namely the use of multiple sequence alignments to construct hidden Markov models (HMMs), means that the HMM does not distinguish orthologs and paralogs.

In addition to comparing and contrasting the four UPF0201 protein structures, we have used structure based sequence alignments to construct a phylogenetic tree that relates UPF0201 family members to L5 ribosomal subunits and other structurally similar RNA binding proteins, thereby extending the evolutionary purview of the RRM motif superfamily.

We performed a multiple sequence-alignment to construct a phylogenetic tree on the basis of NDBs of the 51 silkworm ABC transporters.

Unique motifs in the SEO family were identified by extracting partial alignments to construct HMMs.

Since we generate probabilities for each of the two possible contiguous fragments, we use only the probabilities from the fragment with the better alignments to construct the likelihood.